Neuroimaging Data Processing/Print version

= 1. Introduction =

= 2. Data =

= 2.1 Storage =

= 2.1.1 Filetypes =

= 2.1.1.1 DICOM =

= 2.1.1.2 NIfTI =

= 2.1.1.3 AFNI =

= 2.1.1.4 GIfTI =

= 2.1.2 Organization =

= 3. Processing =

= 3.1 Steps =

= 3.1.1 Discarding First Volumes =

= 3.1.2 Despiking =

= 3.1.3 Slice Timing =

= 3.1.4 Realignment =

= 3.1.5 Skull Stripping =

= 3.1.6 Tissue Segmentation =

= 3.1.7 Coregistration and Normalization =

= 3.1.8 Field Map Correction =

= 3.1.9 Physiological Noise Regression =

= 3.1.10 Temporal Filtering =

= 3.1.11 Smoothing =

= 3.1.12 Surface Extraction =

= 3.2 Tools =

= 3.2.1 SPM =

= 3.2.2 FSL =

= 3.2.3 AFNI =

= 4. References =

= 5. Glossary =