Chemical Information Sources/SIRCh/Bioinformatics

SIRCh: Selected Internet Resources for Chemistry

Educational Programs

 * Education link at NCBI
 * DGRWeb American Chemical Society Directory of Graduate Research
 * Bioinformatics Training Programs (Wiley)
 * Informatics Degree Programs Summary (maintained by Bradley Hemminger, UNC SILS; includes bioinformatics and chemoinformatics)
 * PhD in Informatics (Indiana University; has bioinformatics, cheminformatics, and complex systems tracks)
 * MS in Bioinformatics (Indiana University)
 * MS in Chemical Informatics (Indiana University]
 * Bioinformatics at the University of Manchester

Other Links

 * BITS Bioinformatics Tutorials Series (MIT)
 * Art's Biotech Resource
 * CN3D a helper application for your web browser that allows you to view 3-dimensional structures from NCBI's Entrez retrieval service. Cn3D runs on Windows, MacOS, and Unix. Cn3D simultaneously displays structure, sequence, and alignment.
 * EMBL-EBI European Bioinformatics Institute
 * Ensembl: a joint project between EMBL-EBI and the Sanger Centre to develop a software system which produces and maintains automatic annotation on eukaryotic genomes.
 * euGenes Genomic Information for Eukaryotic Organisms
 * GenBank annotated genetic sequence collection of all publicly available DNA sequences
 * GenomeNet WWW Server (Kyoto)
 * Genomic Biology Web page at NCBI
 * GO Gene Ontology Database
 * GOLD Genomes OnLine Database: tracks the status of over 250 genomes
 * BioMinT (Gene and Protein Synonyms)
 * HUGO Gene Nomenclature Committee
 * Kyoto Encyclopedia of Genes and Genomes (KEGG)
 * NAR Database Categories List Nucleic Acids Research.
 * National Center for Biotechnology Information (NCBI)
 * NCBI Genome Resources Guide
 * National Center for Genome Resources
 * National Human Genome Research Institute (NHGRI)
 * Omics Gateway Access to genomics journal articles, news, tools, and links from Nature Publishing Group
 * Pfam database of protein families and HMMs
 * Probe database reagents for functional genomics (NCBI)
 * Protein Data Bank (PDB)
 * Quantitative Biology Archive arXiv.org
 * SMART classifies protein families into domains
 * SWISS-PROT annotated protein sequences

Indiana Links

 * National Center for Glycomics and Glycoproteomics (Indiana University)
 * Biocomplexity Institute (Indiana University)
 * Bloomington Life Sciences Partnership
 * Center for Computational Biology and Bioinformatics (Indiana University)
 * Center for Genomics and Bioinformatics (Indiana University)
 * Monarch LifeSciences (formerly, Indiana Centers for Applied Protein Sciences (INCAPS))
 * MetaCyt (Indiana Metabolomics and Cytomics Initiative)
 * MetaCyt Biochemical Analysis Center